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varimpact - Variable importance through targeted causal inference, with Alan Hubbard

  •    R

varimpact uses causal inference statistics to generate variable importance estimates for a given dataset and outcome. It answers the question: which of my Xs are most related to my Y? Each variable’s influence on the outcome is estimated semiparametrically, without assuming a linear relationship or other functional form, and the covariate list is ranked by order of importance. This can be used for exploratory data analysis, for dimensionality reduction, for experimental design (e.g. to determine blocking and re-randomization), to reduce variance in an estimation procedure, etc. See Hubbard, Kennedy, & van der Laan (2018) for more details, or Hubbard & van der Laan (2016) for an earlier description. Each covariate is analyzed using targeted minimum loss-based estimation (TMLE) as though it were a treatment, with all other variables serving as adjustment variables via SuperLearner. Then the statistical significance of the estimated treatment effect for each covariate determines the variable importance ranking. This formulation allows the asymptotics of TMLE to provide valid standard errors and p-values, unlike other variable importance algorithms.

survtmle - Targeted Learning for Survival Analysis

  •    R

survtmle is an R package designed to use targeted minimum loss-based estimation (TMLE) to compute covariate-adjusted marginal cumulative incidence estimates in right-censored survival settings with and without competing risks. The estimates can leverage ensemble machine learning via the SuperLearner package. If you encounter any bugs or have any specific feature requests, please file an issue.





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