transmart-core - Core components and documentation of the tranSMART platform

  •        12

This is the repository containing the core components and documentation of the tranSMART platform, an open source data sharing and analytics platform for translational biomedical research. tranSMART is maintained by the tranSMART Foundation. Official releases can be found on the tranSMART Foundation website, and the tranSMART Foundation's development repositories can be found at https://github.com/transmart/. All the instructions on how to install, build and run a private instance of tranSMART, get set up for developing or upgrade to the latest version of tranSMART from an older version are available in the documentation. For details on contributing code changes via pull requests, see the Contributing document.

https://github.com/thehyve/transmart-core

Tags
Implementation
License
Platform

   




Related Projects

Open Source Warehouse Management System

  •    Java

The goal of this project is to provide a high-end, open source warehouse management system: picoWMS. This system does not just track inventory, recieve goods, process orders, creates pick tickets but Manages the warehouse.

gpdb - Greenplum Database

  •    C

The Greenplum Database (GPDB) is an advanced, fully featured, open source data warehouse. It provides powerful and rapid analytics on petabyte scale data volumes. Uniquely geared toward big data analytics, Greenplum Database is powered by the world’s most advanced cost-based query optimizer delivering high analytical query performance on large data volumes. The Greenplum project is released under the Apache 2 license. We want to thank all our current community contributors and are really interested in all new potential contributions. For the Greenplum Database community no contribution is too small, we encourage all types of contributions.

incubator-doris - Paloļ¼Œan MPP data warehouse

  •    C++

Palo is an MPP-based interactive SQL data warehousing for reporting and analysis. Palo mainly integrates the technology of Google Mesa and Apache Impala. Unlike other popular SQL-on-Hadoop systems, Palo is designed to be a simple and single tightly coupled system, not depending on other systems. Palo not only provides high concurrent low latency point query performance, but also provides high throughput queries of ad-hoc analysis. Palo not only provides batch data loading, but also provides near real-time mini-batch data loading. Palo also provides high availability, reliability, fault tolerance, and scalability. The simplicity (of developing, deploying and using) and meeting many data serving requirements in single system are the main features of Palo. In Baidu, the largest Chinese search engine, we run a two-tiered data warehousing system for data processing, reporting and analysis. Similar to lambda architecture, the whole data warehouse comprises data processing and data serving. Data processing does the heavy lifting of big data: cleaning data, merging and transforming it, analyzing it and preparing it for use by end user queries; data serving is designed to serve queries against that data for different use cases. Currently data processing includes batch data processing and stream data processing technology, like Hadoop, Spark and Storm; Palo is a SQL data warehouse for serving online and interactive data reporting and analysis querying.

Shark - Hive on Spark

  •    Scala

Shark is an open source distributed SQL query engine for Hadoop data. It brings state-of-the-art performance and advanced analytics to Hive users. It runs Hive queries up to 100x faster in memory, or 10x on disk. it is a large-scale data warehouse system for Spark designed to be compatible with Apache Hive.

Learning Management Infrastructure (LMI)

  •    

The Learning Management Infrastructure is a set of open source tools that enables school districts to better deal with data storage, data integration, reporting, managing student achievement, communicating with stakeholders, and coordinating curriculum.


go - The Open Source Data Science Masters

  •    

The open-source curriculum for learning Data Science. Foundational in both theory and technologies, the OSDSM breaks down the core competencies necessary to making use of data. We need more Data Scientists.

opentaps = ERP + CRM

  •    Java

opentaps Open Source ERP + CRM, is a fully integrated application suite that supports eCommerce, Customer Relationship Management, Warehouse and Inventory Management, Supply Chain Management, and Financial Management to Business Intelligence and mobility integration out-of-the-box.

OpenERP - Open Source Business Applications

  •    Python

OpenERP is a comprehensive suite of business applications including Sales, CRM, Project management, Warehouse management, Manufacturing, Financial management, Human Resources, Point of Sale, Accounting, Purchase, Marketing and lot more. It has over 700 OpenERP modules available on Launchpad. The package contains OpenERP server, web client and GTK client.

grandnode - Free and Open Source Ecommerce Shopping Cart solution based on ASP.NET CORE and MongoDB

  •    CSharp

Thank you for choosing GrandNode! It's an open source, free, cross-platform e-commerce software based on ASP.NET Core 2.2 and MongoDB - NoSQL database. You can run it on Linux, Windows and MacOS easily. GrandNode also supports Docker, so you are able to install it just in a seconds with Docker. It can be used for any kind of online store. GrandNode is a perfect choice for people who want to sell simple products. It's solution dedicated for the most demanding users. You can also create auctions, booking/reservation products or product kits. GrandNode became a mature solution especially for developers who want to develop a modern, functional and high performance e-commerce system.

datawrapper - An open source data visualization platform helping everyone to create simple, correct and embeddable charts in minutes

  •    PHP

This is Datawrapper Core, the open source platform that powers the charting tools hosted as free service on datawrapper.de. Most of the functionality in Datawrapper is provided by plugins, some of which are open source but the majority is not. However, you are free to create your own visualization plugins.

Apache Tajo - A big data warehouse system on Hadoop

  •    Java

Apache Tajo is a robust big data relational and distributed data warehouse system for Apache Hadoop. Tajo is designed for low-latency and scalable ad-hoc queries, online aggregation, and ETL (extract-transform-load process) on large-data sets stored on HDFS (Hadoop Distributed File System) and other data sources.

Zenoss - Open Source IT Management

  •    Python

Zenoss Core is an open source IT monitoring product that delivers the functionality to effectively manage the configuration, health, performance of networks, servers and applications through a single, integrated software package.

Platformus - Free, open source and cross-platform CMS based on ASP.NET Core and ExtCore framework

  •    CSharp

With the full set of the extensions Platformus is object-oriented CMS and object is the central unit of its data model. Objects can be standalone and embedded. While standalone object can be accessed via URL (using some specified view), embedded object can only be used as the part of others. Each object consists of properties and relations and is described by its class. Classes describe properties and relations of the objects with the members. Each member has code, name, data type (for properties) or class (for relations). In addition, with the data sources, classes describe which objects are to be loaded together with the object.

CK-ERP

  •    PHP

An accounting / educational / MRP / ERP / CRM system for SMEs

cornerstone - JavaScript library to display interactive medical images including but not limited to DICOM

  •    Javascript

Cornerstone is an open source project with a goal to deliver a complete web based medical imaging platform. This repository contains the Cornerstone Core component which is a lightweight JavaScript library for displaying medical images in modern web browsers that support the HTML5 canvas element. Cornerstone Core is not meant to be a complete application itself, but instead a component that can be used as part of larger more complex applications. See the OHIF Viewer for an example of using the various Cornerstone libraries to build a simple study viewer. Cornerstone Core is agnostic to the actual container used to store image pixels as well as the transport mechanism used to get the image data. In fact, Cornerstone Core itself has no ability to read/parse or load images and instead depends on one or more ImageLoaders to function.

Prophet - Tool for producing high quality forecasts for time series data that has multiple seasonality with linear or non-linear growth

  •    Python

Prophet is a procedure for forecasting time series data. It is based on an additive model where non-linear trends are fit with yearly and weekly seasonality, plus holidays. It works best with daily periodicity data with at least one year of historical data. Prophet is robust to missing data, shifts in the trend, and large outliers.Prophet is open source software released by Facebook's Core Data Science team. It is available for download on CRAN and PyPI.

xtuple - This repository contains the source code for the database schema for the PostBooks edition of xTuple ERP, xTuple's REST API core, and xTuple's web application core

  •    PLpgSQL

xTuple is open-source ERP and CRM software -- automated, integrated business process management and corporate relationship management. Learn more at xTuple.com. The code is managed by an eponymous company in Norfolk, VA, and our community stretches around the world. The xTuple client is a desktop app written in the cross-platform Qt framework. Many of our commercial customers are inventory-based manufacturers or distributors, and we have a fair amount of commercially-licensed code to specifically support these use-cases. That said, businesses of all sorts, even services-based companies, run their operations on our open-source core.

xarray - N-D labeled arrays and datasets in Python

  •    Python

xarray (formerly xray) is an open source project and Python package that aims to bring the labeled data power of pandas to the physical sciences, by providing N-dimensional variants of the core pandas data structures. Our goal is to provide a pandas-like and pandas-compatible toolkit for analytics on multi-dimensional arrays, rather than the tabular data for which pandas excels. Our approach adopts the Common Data Model for self- describing scientific data in widespread use in the Earth sciences: xarray.Dataset is an in-memory representation of a netCDF file.

fsharp - The F# compiler, core library and core tools (open source edition)

  •    F#

The F# compiler, core library and core tools (open source edition)

kendo-ui-core - An HTML5, jQuery-based widget library for building modern web apps.

  •    Javascript

Kendo UI is everything you need to build sites and apps with HTML5 & JavaScript. Kendo UI Core is the free and open-source version of Kendo UI that provides access to the web's best UI widgets and key framework features, essential for developing great experiences for the web and mobile.Kendo UI Core is a free and open-source subset of Kendo UI. The following table details the widgets and features available in Kendo UI Core, as well as the additional features available via a commercial Kendo UI license.