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turf - A modular geospatial engine written in JavaScript
Turf is a JavaScript library for spatial analysis. It includes traditional spatial operations, helper functions for creating GeoJSON data, and data classification and statistics tools. Turf can be added to your website as a client-side plugin, or you can run Turf server-side with Node.js (see below).Download the minified file, and include it in a script tag. This will expose a global variable named turf.
algorithm computational-geometry geojson turf gis geo geojs geospatial geography geometry map contour centroid tin extent grid polygon line point area analysis statistics stats midpoint plane quantile jenks sampledeTiN - DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control
DeTiN estimates tumor in normal (TiN) based on tumor and matched normal sequencing data. The estimate is based on both candidate SSNVs and aSCNAs. DeTiN then applies the joint TiN estimate to reclassify SSNVs and InDels as somatic or germline. Install and run time on standard exome data is about 5 mins. Please see github wiki for description of input files.
cancer-genomics cancer-variants cancer-genome-atlas tumor detection tumor-in-normal somatic-mutations tin
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