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turf - A modular geospatial engine written in JavaScript

  •    Javascript

Turf is a JavaScript library for spatial analysis. It includes traditional spatial operations, helper functions for creating GeoJSON data, and data classification and statistics tools. Turf can be added to your website as a client-side plugin, or you can run Turf server-side with Node.js (see below).Download the minified file, and include it in a script tag. This will expose a global variable named turf.

deTiN - DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control

  •    Jupyter

DeTiN estimates tumor in normal (TiN) based on tumor and matched normal sequencing data. The estimate is based on both candidate SSNVs and aSCNAs. DeTiN then applies the joint TiN estimate to reclassify SSNVs and InDels as somatic or germline. Install and run time on standard exome data is about 5 mins. Please see github wiki for description of input files.

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