Displaying 1 to 7 from 7 results

xarray - N-D labeled arrays and datasets in Python

  •    Python

xarray (formerly xray) is an open source project and Python package that aims to bring the labeled data power of pandas to the physical sciences, by providing N-dimensional variants of the core pandas data structures. Our goal is to provide a pandas-like and pandas-compatible toolkit for analytics on multi-dimensional arrays, rather than the tabular data for which pandas excels. Our approach adopts the Common Data Model for self- describing scientific data in widespread use in the Earth sciences: xarray.Dataset is an in-memory representation of a netCDF file.

reflow - A language and runtime for distributed, incremental data processing in the cloud

  •    Go

Reflow is a system for incremental data processing in the cloud. Reflow enables scientists and engineers to compose existing tools (packaged in Docker images) using ordinary programming constructs. Reflow then evaluates these programs in a cloud environment, transparently parallelizing work and memoizing results. Reflow was created at GRAIL to manage our NGS (next generation sequencing) bioinformatics workloads on AWS, but has also been used for many other applications, including model training and ad-hoc data analyses. Reflow thus allows scientists and engineers to write straightforward programs and then have them transparently executed in a cloud environment. Programs are automatically parallelized and distributed across multiple machines, and redundant computations (even across runs and users) are eliminated by its memoization cache. Reflow evaluates its programs incrementally: whenever the input data or program changes, only those outputs that depend on the changed data or code are recomputed.

ITK - Insight Segmentation and Registration Toolkit -- Mirror

  •    C++

The National Library of Medicine Insight Segmentation and Registration Toolkit (ITK), or Insight Toolkit, is an open-source, cross-platform C++ toolkit for segmentation and registration. Segmentation is the process of identifying and classifying data found in a digitally sampled representation. Typically the sampled representation is an image acquired from such medical instrumentation as CT or MRI scanners. Registration is the task of aligning or developing correspondences between data. For example, in the medical environment, a CT scan may be aligned with a MRI scan in order to combine the information contained in both. The toolkit may be built from source using CMake.

Stdlib - Standard library for JavaScript and Node.js.

  •    Javascript

Stdlib is a standard library for JavaScript and Node.js, with an emphasis on numeric computing. The library provides a collection of robust, high performance libraries for mathematics, statistics, streams, utilities, and more.




itk-jupyter-widgets - Interactive Jupyter widgets to visualize images in 2D and 3D

  •    Python

Interactive Jupyter widgets to visualize images in 2D and 3D. These widgets are designed to support image analysis with the Insight Toolkit (ITK), but they also work with other spatial analysis tools in the scientific Python ecosystem.

jtk - The Mines Java Toolkit

  •    Java

The Mines Java Toolkit (Mines JTK) is a set of Java packages and native (non-Java) software libraries for science and engineering. Applications currently include digital signal processing, linear algebra, optimization, meshing, interpolation, and 2D and 3D graphics. The Mines JTK is licensed under the Apache License, Version 2.0.