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abyss - :microscope: Assemble large genomes using short reads

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ABySS is a de novo sequence assembler intended for short paired-end reads and large genomes. Please cite our papers.

arcs - Scaffold genome sequence assemblies using 10x Genomics data

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Scaffolding genome sequence assemblies using 10X Genomics GemCode/Chromium data. The Makefile located here: Examples/arcs-make will run the full ARCS pipeline. It will also optionally run the misassembly corrector Tigmint prior to scaffolding with ARCS.