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NiftyNet - An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

  •    Python

NiftyNet is a consortium of research organisations (BMEIS -- School of Biomedical Engineering and Imaging Sciences, King's College London; WEISS -- Wellcome EPSRC Centre for Interventional and Surgical Sciences, UCL; CMIC -- Centre for Medical Image Computing, UCL; HIG -- High-dimensional Imaging Group, UCL), where BMEIS acts as the consortium lead. NiftyNet is not intended for clinical use.

open-solution-data-science-bowl-2018 - Open solution to the Data Science Bowl 2018

  •    Python

This is an open solution to the Data Science Bowl 2018 based on the topcoders winning solution from ods.ai. In this open source solution you will find references to the neptune.ml. It is free platform for community Users, which we use daily to keep track of our experiments. Please note that using neptune.ml is not necessary to proceed with this solution. You may run it as plain Python script 😉.

DCEMRI.jl - DCE MRI analysis in Julia

  •    Julia

Julia is a high-level, high-performance dynamic programming language for technical computing, with syntax that is familiar to users of other technical computing environments. It provides a sophisticated compiler, distributed parallel execution, numerical accuracy, and an extensive mathematical function library. The library, largely written in Julia itself, also integrates mature, best-of-breed C and Fortran libraries for linear algebra, random number generation, signal processing, and string processing. Put simply, it looks like Matlab, which is simple to learn and familiar to most MRI researchers, but it works better and faster and is completely free. In particular, for the problem of DCE MRI, Julia's simple and flexible parallel computing model allows almost perfect parallelization of the nonlinear least squares fitting problem. In my informal testing, the intrinsic speed of Julia coupled to my parallel implementation produced a factor of 20-40 speedup over comparable Matlab and Python.






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