jsinspect - Detect copy-pasted and structurally similar code

•    Javascript

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Detect copy-pasted and structurally similar JavaScript code. Requires Node.js 6.0+, and supports ES6, JSX as well as Flow. Note: the project has been mostly rewritten for the 0.10 release and saw several breaking changes.We've all had to deal with code smell, and duplicate code is a common source. While some instances are easy to spot, this type of searching is the perfect use-case for a helpful CLI tool.

code-analysis duplication refactoring clean-code inspect detect code duplicate structure copy paste

jscpd - Copy/paste detector for programming source code.

•    CoffeeScript

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jscpd is a tool for detect copy/paste "design pattern" in programming source code.If you need support language not from list feel free to create request.

cpd copy-paste code-quality code-smells duplication quality quality-measures pmd analyze clone copy paste coffeescript sass css twig xml xsl html yaml

fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)

•    C++

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A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance. By default, the HTML report is saved to fastp.html (can be specified with -h option), and the JSON report is saved to fastp.json (can be specified with -j option).

fastq qc preprocessing filtering adapter overlap quality trimming splitting quality-control filter ngs bioinformatics overlapping error umi sequencing illumina polyg duplication

vscode-duplicate - :electric_plug: Ability to duplicate files in VS Code.

•    TypeScript

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Ability to duplicate files and directories in VS Code. If you want to thank me, or promote your Issue.

visual-studio-code vscode vscode-extension duplication duplicate copy file directory

codeclimate-duplication - Code Climate engine for code duplication analysis

•    Ruby

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codeclimate-duplication is an engine that wraps flay and supports Java, Ruby, Python, JavaScript, and PHP. You can run it on the command line using the Code Climate CLI or on our hosted analysis platform. The duplication engine's algorithm can be surprising, but it's actually very simple. We have a docs page explaining the algorithm.

duplication quality code-quality static-analysis static-code-analysis codeclimate-engine codeclimate

gencore - Generate consensus reads to reduce sequencing noises

•    C++

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A tool to GENerate COnsensus REads. gencore is a tool to generate consensus reads from paired-end data. It groups the reads derived from the same original DNA template, merges them and generates a consensus read, which contains much less errors than the original reads.

sequencing ngs bioinformatics sequencing-error consensus deep-sequencing sequencing-noise duplication