Displaying 1 to 9 from 9 results

bioconda-recipes - Conda recipes for the bioconda channel.

  •    Shell

Conda is a platform- and language-independent package manager that sports easy distribution, installation and version management of software. The bioconda channel is a Conda channel providing bioinformatics related packages for Linux and Mac OS. This repository hosts the corresponding recipes. Please visit https://bioconda.github.io for details.

conda - OS-agnostic, system-level binary package manager and ecosystem

  •    Python

Conda is a cross-platform, language-agnostic binary package manager. It is the package manager used by Anaconda installations, but it may be used for other systems as well. Conda makes environments first-class citizens, making it easy to create independent environments even for C libraries. Conda is written entirely in Python, and is BSD licensed open source. Conda is enhanced by organizations, tools, and repositories created and managed by the amazing members of the conda community. Some of them can be found here.

docker-alpine-miniconda3 - The smallest Docker image with Miniconda3 (Python 3.5) (~143MB)

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This image is based on Alpine Linux image, which is only a 5MB image, and contains Python 3.5 packaged by Continuum with Conda package manager. NOTE: Conda repositories contain only Glibc linked packaged binaries for Linux, so we have to use glibc workaround on Alpine.




conda-training - Conda repository for training

  •    Shell

Conda repository with the same testing environment as BIOCONDA repository. No upload to anaconda or quai.io repositories.

FreeCAD_Conda - conda recipes for freecad and dependencies of freecad

  •    Shell

Conda gives the oppurtunity to distribute FreeCAD in a consistent way for multiple plattforms. This is the biggest advantage of conda: A package-manager wich works in the same way for different platforms. minoconda is similar to anaconda, but only bundles a little subset of packages. Miniconda aims to be a minimalistic installation for the conda-package-manager. With the conda-package-manager you are able to install any package which is provided by Anaconda, and many more.

dropSeqPipe - A SingleCell RNASeq pre-processing pipeline built on snakemake

  •    R

This pipeline is based on snakemake and the dropseq tools provided by the McCarroll Lab. It allows to go from raw data of your Single Cell RNA seq experiment until the final count matrix with QC plots along the way. This is the tool we use in our lab to improve our wetlab protocol as well as provide an easy framework to reproduce and compare different experiments with different parameters.

containers-rules-manuscript - Recommendations to contenarized your bioinformatics software

  •    Shell

This repository contains the manuscript entitled: Recommendations to package and containerize bioinformatics software. Our aim here is to describe how the bioinformatics community can produce better software containers and package to improve reducibility of original results. Feel free to comment, fork and pull-request the current version of the manuscript. If you want to discuss issues or topics around the manuscript please feel free to use the issues and/or pull requests.


vscode-anaconda-extension-pack - Python extension pack for Anaconda

  •    Javascript

The Anaconda Extension Pack is a set of extensions that enhance the experience of Anaconda customers using Visual Studio Code