Displaying 1 to 20 from 48 results

pandas - Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data

  •    Python

pandas is a Python package providing fast, flexible, and expressive data structures designed to make working with "relational" or "labeled" data both easy and intuitive. It aims to be the fundamental high-level building block for doing practical, real world data analysis in Python. Additionally, it has the broader goal of becoming the most powerful and flexible open source data analysis / manipulation tool available in any language. It is already well on its way toward this goal. Binary installers for the latest released version are available at the Python package index and on conda.

PRNet - Joint 3D Face Reconstruction and Dense Alignment with Position Map Regression Network (ECCV 2018)

  •    Python

This is an official python implementation of PRN. PRN is a method to jointly regress dense alignment and 3D face shape in an end-to-end manner. More examples on Multi-PIE and 300VW can be seen in YouTube .

aeneas - aeneas is a Python/C library and a set of tools to automagically synchronize audio and text (aka forced alignment)

  •    Python

aeneas is a Python/C library and a set of tools to automagically synchronize audio and text (aka forced alignment). aeneas automatically generates a synchronization map between a list of text fragments and an audio file containing the narration of the text. In computer science this task is known as (automatically computing a) forced alignment.

AlignTab - An alignment plugin for Sublime Text using regular expression

  •    Python

The most flexible alignment plugin for Sublime Text 3. This plugin is inspired by the excellent VIM plugin, tabular. ST2 support is deprecated but however, it is still possible to install AlignTab on ST2 via Package Control.

seqan - SeqAn's official repository.

  •    C++

SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. Our library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries. SeqAn is easy to use and simplifies the development of new software tools with a minimal loss of performance. The SeqAn library itself, the tests and demos are licensed under the very permissing 3-clause BSD License. The licenses for the applications themselves can be found in the LICENSE files.

wtdbg2 - Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

  •    C

Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times faster than CANU and FALCON while producing contigs of comparable base accuracy. During assembly, wtdbg2 chops reads into 1024bp segments, merges similar segments into a vertex and connects vertices based on the segment adjacency on reads. The resulting graph is called fuzzy Bruijn graph (FBG). It is akin to De Bruijn graph but permits mismatches/gaps and keeps read paths when collapsing k-mers. The use of FBG distinguishes wtdbg2 from the majority of long-read assemblers.

.NET Bio

  •    DotNet

.Net Bio is a language-neutral bioinformatics toolkit built using the Microsoft 4.5 .NET Framework to help developers, researchers, and scientists.


  •    DotNet

BioSharp is a pure and test-driven .NET library for use in bioinformatics and related fields.

BOW - Bioinformatics On Windows


A group of tools run on Windows for Bioinformatics. Include ported tools from Linux (e.g. BWA, SAMTOOLS), and later original Windows applications.


  •    JQuery

Valing is a small jQuery plugin which allows you to align vertically any HTML element without CSS hacks.


  •    JQuery

jQuery table formatting plugin for decimal alignment and other prettifying of table columns

phase-align - Aligns a pair of ndarrays up to translation

  •    Javascript

Aligns two ndarrays up to a translation such that the sum of squared differences between them is minimized. This can be used as a quick preprocess for other more detailed alignment algorithms.

align - A general purpose application that aligns text

  •    Go

The focus of this application is to provide a fast, efficient, and useful tool for aligning text. Its creation is the result of inspiration from several other amazing alignment tools, namely column or the Sublime Text plugin AlignTab.Sometimes, it's just easier to align a CSV (or delimited file) by its delimiter and view the columns in your plain text editor (which saves you from opening Excel!).

cmpgpx - Show the differences between GPX files

  •    Python

compare_gpx is a python3 script that uses the Needleman-Wunsch algorithm to align GPS tracks in GPX files so they can be compared. The image below is an example of a comparison between thun_1_even.gpx and thun_2_even.gpx with the distance cutoff set to 10. The blue points indicate matches, whereas the red and orange indicate differences.

RTIconButton - A Interface Builder configurable UIButton with a image icon

  •    Objective-C

This is a drop-in replacement for UIButton, which support convenient configuration for image icon's position and icon title margin. It also support control centent aligns.

jquery.atteeeeention - A 'Google Image Search style' image alignment jQuery plugin.

  •    Javascript

A 'Google Image Search style' image alignment jQuery plugin. If you have a image gallery with different width and height for each image, your page may look messy. Use this plugin to align your gallery with a 'Google Image Search' style result.

jquery.center - A jQuery plugin that centralizes DOM element

  •    Javascript

A jQuery plugin that centralizes DOM element. This simple plugin helps you centralize your DOM element against their parent element or the window. You can also specify the top of the DOM element by passing customized settings. This plugin only works for absolute elements.

atom-aligner - Easily align multi-line with support for different operators and custom configurations

  •    Javascript

Package allows user to change the way characters are aligned. For supported characters/operators, see individual add-on packages.