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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.DeepVariant is a suite of Python/C++ programs that run on any Unix-like operating system. For convenience the documentation refers to building and running DeepVariant on Google Cloud Platform, but the tools themselves can be built and run on any standard Linux computer, including on-premise machines. Note that DeepVariant currently requires Python 2.7 and does not yet work with Python 3.

https://github.com/google/deepvariantTags | tensorflow deep-neural-network genomics science dna sequencing genome bioinformatics deep-learning ngs deepvariant machine-learning |

Implementation | Python |

License | Public |

Platform | Windows Linux |

TensorLayer is a novel TensorFlow-based deep learning and reinforcement learning library designed for researchers and engineers. It provides a large collection of customizable neural layers / functions that are key to build real-world AI applications. TensorLayer is awarded the 2017 Best Open Source Software by the ACM Multimedia Society. Simplicity : TensorLayer lifts the low-level dataflow interface of TensorFlow to high-level layers / models. It is very easy to learn through the rich example codes contributed by a wide community.

tensorlayer deep-learning tensorflow machine-learning data-science neural-network reinforcement-learning artificial-intelligence gan a3c tensorflow-tutorials dqn object-detection chatbot tensorflow-tutorial imagenet googleDeep learning is a group of exciting new technologies for neural networks. Through a combination of advanced training techniques and neural network architectural components, it is now possible to create neural networks of much greater complexity. Deep learning allows a neural network to learn hierarchies of information in a way that is like the function of the human brain. This course will introduce the student to computer vision with Convolution Neural Networks (CNN), time series analysis with Long Short-Term Memory (LSTM), classic neural network structures and application to computer security. High Performance Computing (HPC) aspects will demonstrate how deep learning can be leveraged both on graphical processing units (GPUs), as well as grids. Focus is primarily upon the application of deep learning to problems, with some introduction mathematical foundations. Students will use the Python programming language to implement deep learning using Google TensorFlow and Keras. It is not necessary to know Python prior to this course; however, familiarity of at least one programming language is assumed. This course will be delivered in a hybrid format that includes both classroom and online instruction. This syllabus presents the expected class schedule, due dates, and reading assignments. Download current syllabus.

neural-network machine-learning tensorflow keras deeplearningRepository for the book Introduction to Artificial Neural Networks and Deep Learning: A Practical Guide with Applications in Python. Deep learning is not just the talk of the town among tech folks. Deep learning allows us to tackle complex problems, training artificial neural networks to recognize complex patterns for image and speech recognition. In this book, we'll continue where we left off in Python Machine Learning and implement deep learning algorithms in PyTorch.

deep-learning neural-network machine-learning tensorflow artificial-intelligence data-science pytorchCompared to a classical approach, using a Recurrent Neural Networks (RNN) with Long Short-Term Memory cells (LSTMs) require no or almost no feature engineering. Data can be fed directly into the neural network who acts like a black box, modeling the problem correctly. Other research on the activity recognition dataset can use a big amount of feature engineering, which is rather a signal processing approach combined with classical data science techniques. The approach here is rather very simple in terms of how much was the data preprocessed. Let's use Google's neat Deep Learning library, TensorFlow, demonstrating the usage of an LSTM, a type of Artificial Neural Network that can process sequential data / time series.

machine-learning deep-learning lstm human-activity-recognition neural-network rnn recurrent-neural-networks tensorflow activity-recognitionA generic image detection program that uses Google's Machine Learning library, Tensorflow and a pre-trained Deep Learning Convolutional Neural Network model called Inception. This model has been pre-trained for the ImageNet Large Visual Recognition Challenge using the data from 2012, and it can differentiate between 1,000 different classes, like Dalmatian, dishwasher etc. The program applies Transfer Learning to this existing model and re-trains it to classify a new set of images.

image-detection machine-learning deep-learning deep-neural-networks convolutional-neural-networks tensorflow"Data is the new oil" is a saying which you must have heard by now along with the huge interest building up around Big Data and Machine Learning in the recent past along with Artificial Intelligence and Deep Learning. Besides this, data scientists have been termed as having "The sexiest job in the 21st Century" which makes it all the more worthwhile to build up some valuable expertise in these areas. Getting started with machine learning in the real world can be overwhelming with the vast amount of resources out there on the web. "Practical Machine Learning with Python" follows a structured and comprehensive three-tiered approach packed with concepts, methodologies, hands-on examples, and code. This book is packed with over 500 pages of useful information which helps its readers master the essential skills needed to recognize and solve complex problems with Machine Learning and Deep Learning by following a data-driven mindset. By using real-world case studies that leverage the popular Python Machine Learning ecosystem, this book is your perfect companion for learning the art and science of Machine Learning to become a successful practitioner. The concepts, techniques, tools, frameworks, and methodologies used in this book will teach you how to think, design, build, and execute Machine Learning systems and projects successfully.

machine-learning deep-learning text-analytics classification clustering natural-language-processing computer-vision data-science spacy nltk scikit-learn prophet time-series-analysis convolutional-neural-networks tensorflow keras statsmodels pandas deep-neural-networksA comprehensive list of Deep Learning / Artificial Intelligence and Machine Learning tutorials - rapidly expanding into areas of AI/Deep Learning / Machine Vision / NLP and industry specific areas such as Automotives, Retail, Pharma, Medicine, Healthcare by Tarry Singh until at-least 2020 until he finishes his Ph.D. (which might end up being inter-stellar cosmic networks! Who knows! 😀)

machine-learning deep-learning tensorflow pytorch keras matplotlib aws kaggle pandas scikit-learn torch artificial-intelligence neural-network convolutional-neural-networks tensorflow-tutorials python-data ipython-notebook capsule-networkTFlearn is a modular and transparent deep learning library built on top of Tensorflow. It was designed to provide a higher-level API to TensorFlow in order to facilitate and speed-up experimentations, while remaining fully transparent and compatible with it. The high-level API currently supports most of recent deep learning models, such as Convolutions, LSTM, BiRNN, BatchNorm, PReLU, Residual networks, Generative networks... In the future, TFLearn is also intended to stay up-to-date with latest deep learning techniques.

tflearn tensorflow neural-network deep-learning machine-learning data-scienceSome examples require MNIST dataset for training and testing. Don't worry, this dataset will automatically be downloaded when running examples (with input_data.py). MNIST is a database of handwritten digits, for a quick description of that dataset, you can check this notebook.

recurrent-neural-networks convolutional-neural-networks deep-learning-tutorial tensorflow tensorlayer keras deep-reinforcement-learning tensorflow-tutorials deep-learning machine-learning notebook autoencoder multi-layer-perceptron reinforcement-learning tflearn neural-networks neural-network neural-machine-translation nlp cnnWhile research in Deep Learning continues to improve the world, we use a bunch of tricks to implement algorithms with TensorLayer day to day. Here are a summary of the tricks to use TensorLayer. If you find a trick that is particularly useful in practice, please open a Pull Request to add it to the document. If we find it to be reasonable and verified, we will merge it in.

tensorlayer tensorflow deep-learning machine-learning data-science neural-network reinforcement-learning neural-networks tensorflow-tutorials tensorflow-models computer-vision tensorflow-framework tensorflow-library tflearn keras tensorboard nlp natural-language-processing lasagne tensorflow-experimentsKeras is a high-level neural networks API, written in Python and capable of running on top of TensorFlow, CNTK, or Theano. It was developed with a focus on enabling fast experimentation. Being able to go from idea to result with the least possible delay is key to doing good research.

deep-learning tensorflow theano neural-networks machine-learning data-scienceEdward is a Python library for probabilistic modeling, inference, and criticism. It is a testbed for fast experimentation and research with probabilistic models, ranging from classical hierarchical models on small data sets to complex deep probabilistic models on large data sets. Edward fuses three fields: Bayesian statistics and machine learning, deep learning, and probabilistic programming. Edward is built on top of TensorFlow. It enables features such as computational graphs, distributed training, CPU/GPU integration, automatic differentiation, and visualization with TensorBoard.

bayesian-methods deep-learning machine-learning data-science tensorflow neural-networks statistics probabilistic-programmingTensorFlow is Google's machine learning runtime. It is implemented as C++ runtime, along with Python framework to support building a variety of models, especially neural networks for deep learning. It is interesting to be able to use TensorFlow in a node.js application using just JavaScript (or TypeScript if that's your preference). However, the Python functionality is vast (several ops, estimator implementations etc.) and continually expanding. Instead, it would be more practical to consider building Graphs and training models in Python, and then consuming those for runtime use-cases (like prediction or inference) in a pure node.js and Python-free deployment. This is what this node module enables.

tensorflow node-tensorflow nodejs machine-learning deep-learning npm-package tf tensor ml ai neural-networks neuralnetworks deeplearning model numerical-computation googleThis repository contains lecture transcripts and homework assignments as Jupyter Notebooks for the first of three Kadenze Academy courses on Creative Applications of Deep Learning w/ Tensorflow. It also contains a python package containing all the code developed during all three courses. The first course makes heavy usage of Jupyter Notebook. This will be necessary for submitting the homeworks and interacting with the guided session notebooks I will provide for each assignment. Follow along this guide and we'll see how to obtain all of the necessary libraries that we'll be using. By the end of this, you'll have installed Jupyter Notebook, NumPy, SciPy, and Matplotlib. While many of these libraries aren't necessary for performing the Deep Learning which we'll get to in later lectures, they are incredibly useful for manipulating data on your computer, preparing data for learning, and exploring results.

jupyter-notebook neural-network tensorflow deep-learning mooc dockerfile machine-learning tutorial workshopGorgonia is a library that helps facilitate machine learning in Go. Write and evaluate mathematical equations involving multidimensional arrays easily. If this sounds like Theano or TensorFlow, it's because the idea is quite similar. Specifically, the library is pretty low-level, like Theano, but has higher goals like Tensorflow. The main reason to use Gorgonia is developer comfort. If you're using a Go stack extensively, now you have access to the ability to create production-ready machine learning systems in an environment that you are already familiar and comfortable with.

machine-learning artificial-intelligence neural-network computation-graph differentiation gradient-descent gorgonia deep-learning deeplearning deep-neural-networks automatic-differentiation symbolic-differentiationChest Xray image analysis using Deep Learning and exploiting Deep Transfer Learning technique for it with Tensorflow. The maxpool-5 layer of a pretrained VGGNet-16(Deep Convolutional Neural Network) model has been used as the feature extractor here and then further trained on a 2-layer Deep neural network with SGD optimizer and Batch Normalization for classification of Normal vs Nodular Chest Xray Images.

deep-learning vggnet computer-vision medical-imaging chest-xray-images transfer-learning tensorflowTensorFlow Probability is a library for probabilistic reasoning and statistical analysis in TensorFlow. As part of the TensorFlow ecosystem, TensorFlow Probability provides integration of probabilistic methods with deep networks, gradient-based inference via automatic differentiation, and scalability to large datasets and models via hardware acceleration (e.g., GPUs) and distributed computation. Our probabilistic machine learning tools are structured as follows.

tensorflow bayesian-methods deep-learning machine-learning data-science neural-networks statistics probabilistic-programmingHow simple is it to cause a deep neural network to misclassify an image if an attacker is only allowed to modify the color of one pixel and only see the prediction probability? Turns out it is very simple. In many cases, an attacker can even cause the network to return any answer they want. The following project is a Keras reimplementation and tutorial of "One pixel attack for fooling deep neural networks".

keras cnn cifar10 machine-learning tensorflow deep-learning neural-network imagenet image-processing nlpNOTE: Building on the momentum of deeplearn.js, we have joined the TensorFlow family and we are starting a new ecosystem of libraries and tools for Machine Learning in Javascript, called TensorFlow.js. This repo moved from PAIR-code/deeplearnjs to tensorflow/tfjs-core. A part of the TensorFlow.js ecosystem, this repo hosts @tensorflow/tfjs-core, the TensorFlow.js Core API, which provides low-level, hardware-accelerated linear algebra operations and an eager API for automatic differentiation.

deep-learning typescript webgl machine-learning neural-network deep-neural-networks gpu-accelerationThis repository contains a topic-wise curated list of Machine Learning and Deep Learning tutorials, articles and other resources. Other awesome lists can be found in this list. If you want to contribute to this list, please read Contributing Guidelines.

deep-learning-tutorial machine-learning machinelearning deeplearning neural-network neural-networks deep-neural-networks awesome-list awesome list deep-learning
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