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xnots is a desktop post-it / sticky note system for the unix geek. All post-it notes are text files in some directory. Changes made to files in this directory automatically propogate to the displayed note. And yes, notes can be transparent ... :)
Web Sticky Notes is a collaborative sticky-notes board with drag-and-drop between swim lanes. You can set up many projects, each with their own task-streams and tasks. People and priorities that you set up are shared among all projects.
DeskNotes is desktop notes program like sticky notes on your Windows desktop. DeskNotes features Archive, rich text formatting, reminders, synchronization with Microsoft Outlook 2003/2007 and printing. Written in C# for .NET Framework 2.0.