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HyperGraphDB - Database for Storing Strongly-Typed Hypergraphs

HyperGraphDB is a general purpose, open-source data storage mechanism based on a powerful knowledge management formalism known as directed hypergraphs. While a persistent memory model designed mostly for Knowledge management, Artificial Intelligence and Semantic web projects, it can also be used as an embedded object-oriented database for Java projects of all sizes. It could also be used as graph database or as (non-SQL) relational database.

Neo4j - Graph Database

Neo4j is a high-performance graph engine with all the features of a mature and robust database. It is a graph database, storing data in the nodes and relationships of a graph. It includes the usual database features like ACID transactions, durable persistence, concurrency control, transaction recovery, high availability.