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digiKam is an advanced digital photo management application for KDE, which makes importing and organizing digital photos a snap. The photos can be organized in albums which can be sorted chronologically, by directory layout or by custom collections. It provides support to add tag, comment to your images.
Phenex is an application for annotating taxa and phenotypes in character matrix files with ontology terms. Phenex saves ontology annotations alongside traditional character matrix data using the NeXML format standard for evolutionary data. Current Phenex development is taking place at GitHub: https://github.com/phenoscape/Phenex
The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface
Aperture is a Java framework for extracting and querying full-text content and metadata from various information systems. It could crawl and extract information from File system, Websites, Mail boxes and Mail servers. It supports various file formats like Office, PDF, Zip and lot more. Metadata information is extracted from image files. Aperture has a strong focus on semantics, metadata extracted could be mapped to predefined properties.
Mimosa is a modeling and simulation platform, covering the process from building conceptual models to running the simulations. The specification uses ontologies and an extensible set of formalisms for the dynamics. The simulation kernel is based on DEVS.
Framework for text mining, data integration and data analysis. Keywords: ontology and graph alignment, relation mining, warehouse, semantic database integration, bioinformatics, systems biology, microarray, Java.