XEML Environment Ontology

  •        0

XeO is an ontology developed at the Max Planck Institute for Molecular Plant Physiology Golm. XeO describes environmental parameter within biological experiments.




comments powered by Disqus

Related Projects


Nutch is open source web-search software. It builds on Lucene Java, adding web-specifics, such as a crawler, a link-graph database, parsers for HTML and other document formats, etc.

Gene Ontology

The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.

digiKam - Advanced Digital Photo Management

digiKam is an advanced digital photo management application for KDE, which makes importing and organizing digital photos a snap. The photos can be organized in albums which can be sorted chronologically, by directory layout or by custom collections. It provides support to add tag, comment to your images.


owldb allows for the persistence of OWL-ontologies in relational databases and implements the OWL API (http://owlapi.sourceforge.net/).


Phenex is an application for annotating taxa and phenotypes in character matrix files with ontology terms. Phenex saves ontology annotations alongside traditional character matrix data using the NeXML format standard for evolutionary data. Current Phenex development is taking place at GitHub: https://github.com/phenoscape/Phenex


Vogon is a Ontology-based text annotation tool for creating relations between terms in a text. This relations can then be exported as RDF triples.

Metadata Extraction Tool

The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface

Aperture - Java framework for getting data and metadata

Aperture is a Java framework for extracting and querying full-text content and metadata from various information systems. It could crawl and extract information from File system, Websites, Mail boxes and Mail servers. It supports various file formats like Office, PDF, Zip and lot more. Metadata information is extracted from image files. Aperture has a strong focus on semantics, metadata extracted could be mapped to predefined properties.


Mimosa is a modeling and simulation platform, covering the process from building conceptual models to running the simulations. The specification uses ontologies and an extensible set of formalisms for the dynamics. The simulation kernel is based on DEVS.


Framework for text mining, data integration and data analysis. Keywords: ontology and graph alignment, relation mining, warehouse, semantic database integration, bioinformatics, systems biology, microarray, Java.

Open source products are scattered around the web. Please provide information about the open source projects you own / you use. Add Projects.

Tag Cloud >>