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JMeter is a pure Java desktop application designed to load test functional behavior and measure performance. It may be used to test performance both on static and dynamic resources (files, Servlets, Perl scripts, Java Objects, Data Bases and Queries, FTP Servers and more). It can be used to simulate a heavy load on a server, network or object to test its strength or to analyze overall performance under different load types.
Valgrind is an award-winning instrumentation framework for building dynamic analysis tools. There are Valgrind tools that can automatically detect many memory management and threading bugs, and profile your programs in detail. You can also use Valgrind to build new tools.
BASE is the Basic Analysis and Security Engine. It is based on the code from the Analysis Console for Intrusion Databases (ACID) project. This application provides a web front-end to query and analyze the alerts coming from a SNORT IDS system.
GoldenOrb is a cloud-based project for massive-scale graph analysis, built upon Apache Hadoop and modeled after Google's Pregel architecture. It provides solutions to complex data problems, remove limits to innovation and contribute to the emerging ecosystem that spans all aspects of big data analysis. It enables users to run analytics on entire data sets instead of samples.
Jlint will check your Java code and find bugs, inconsistencies and synchronization problems by doing data flow analysis on the code and building the lock graph. Jlint is fast, easy to learn, and requires no changes in the class files to be checked.
PANTHER project: software for modeling of protein sequence and function evolution, and tools for applying these data to the analysis of genome data, expression data and coding SNPs. Details available at http://www.pantherdb.org.