SpEAd (formerly EA Utilities)

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An add-in for Enterprise Architect from Sparx Systems to improve productivity, particularly when maintining existing diagrams.




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Ea-utils - FASTQ processing utilities

Command-line tools for processing biological sequencing data. Barcode demultiplexing, adapter trimming, etc. Primarily written to support an Illumina based pipeline - but should work with any FASTQs. Overview:fastq-mcf Scans a sequence file for adapters, and, based on a log-scaled threshold, determines a set of clipping parameters and performs clipping. Also does skewing detection and quality filtering. fastq-multx Demultiplexes a fastq. Capable of auto-determining barcode id's based on a master