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UMLGraph allows the declarative specification and drawing of UML class and sequence diagrams. The current features are part of an ongoing effort aiming to provide support for all types UML diagrams. Running the UmlGraph doclet on the specification will generate a Graphviz diagram specification that can be automatically processed to create Postscript, GIF, SVG, JPEG, fig, or Framemaker drawings.
LiveGraph is a framework for real-time data visualisation, analysis and logging. It has a real time plotter that can automatically update graphs of your data while it is still being computed by your application. LiveGraph reads files in a simple CSV-style format. For applications developed in Java, LiveGraph additionally provides an API that handles all data logging and persistency issues.
HyperGraphDB is a general purpose, open-source data storage mechanism based on a powerful knowledge management formalism known as directed hypergraphs. While a persistent memory model designed mostly for Knowledge management, Artificial Intelligence and Semantic web projects, it can also be used as an embedded object-oriented database for Java projects of all sizes. It could also be used as graph database or as (non-SQL) relational database.
Rickshaw provides the elements you need to create interactive graphs: renderers, legends, hovers, range selectors etc. It's all based on d3 underneath, so graphs are drawn with standard SVG and styled with CSS.
GLE is a graphics scripting language designed for creating publication quality graphs, plots, diagrams, figures and slides. GLE relies on LaTeX for text output. Its output formats include EPS, PS, PDF, JPEG, and PNG.
Openchart2 is based on the JOpenChart library. It provides a simple interface for Java programmers to create two-dimensional charts and plots. This library features an assortment of graph styles, including advanced scatter plots, bar graphs, pie charts, Radar charts, Dot plots. All chart types support dynamic zooming. Simple arrays or full database sources can provide data to the plotting routines.