Ray: scalable assembly

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de novo genome assembly is now a challenge because of the overwhelming amount of data produced by sequencers. Ray assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2 -- a message passing inferface standard.




Related Projects

Ngsfasttools - A collection of scripts to work with next generation DNA sequencing data.

This project hosts a collection of tools I built to work with next generation sequencing data. They are primarily written in Python, and testing on a linux machine, however the portability of python should mean that they work on other platforms.


Course material for the de novo assembly part (including readQC and trimming) for the INF-BIO9120 course at Univ. of Oslo