colonyzer image analysis software

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Image analysis software for quantification of cell density in microbial cultures (e.g. S. cerevisiae) growing on solid agar plates. Specialises in detection of extremely low cell densities. Forms part of the Quantitative Fitness Analysis (QFA) workflow: Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: This is the version presented, used and demonstrated in the following manuscripts: Lawless et al. 2010 Addinall et al. 2011 Chang et al. 2011 Banks et al. 2012 Development has been moved to github, where Colonyzer has undergone several recent improvements, particuarly making installation easier and analysis faster:



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