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The RDXplorer is a computational tool for copy number variants (CNV) detection in whole human genome sequence data using read depth (RD) coverage. CNV detection is based on the Event-Wise Testing (EWT) algorithm recently published by our group.
THIS SITE HAS BEEN MIGRATED TO SOURCEFORGESourceforge Web SiteSourceforge Project PageProject ScriptsThe following is the previous documentation on this site. IntroductionThis is the code repository for DAWG-PAWS A Distributed Annotation Working Group Pipeline to Annotate Wheat Sequences. DAWG-PAWS is a set of command line programs written in Perl and is released under version 3 of the GNU General Public License. Scripts in development are available for individual download at the project's subve
GeneNavi can create an amazing navigation map of your cared Genes, OMIMs or disease. You can also search snps or cnvs related to some genes or in certain chromosome regions. If you want to verify and visualize your new founded SNPs or CNVs in the NGS experiment, GeneNavi is at your service.
CNViewer is a user-friendly tool for analysis and comparison of Copy Number Variation (CNV). It presents several functionalities such as add sensitive (usually clinical/phenotypic) data, export module, selection of genomic region of interest and supports three methods to input data. CNViewer is an application that runs its core functions entirely on the browser. It is easy to be accessed because no download is necessary. It allows securely use data from local (flexibility only possible with dire
wuHMM (Washington University Hidden Markov Model) is an algorithm for detecting DNA copy number variants (CNVs) from oligonucleotide array comparative genomic hybridization (aCGH) data. This package also contains an algorithm for assigning discrete CNV-region genotypes when multiple samples are available and data visualization tools. Documentation: Prerequisites Usage Manuscript describing wuHMM wuHMM was previously housed at http://groups.google.com/group/wuhmm Papers citing wuHMM Cahan, P., Li