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OpenVAS is a framework of several services and tools offering a comprehensive and powerful vulnerability scanning and vulnerability management solution. It is designed to search for networked devices and computers, discover accessible ports and services, and to test for vulnerabilities on any such ports; plugins allow for further expansion.
Angry IP Scanner (or simply ipscan) is an open-source and cross-platform network scanner designed to be fast and simple to use. It scans IP addresses and ports and it is widely used by network administrators.
Wapiti allows you to audit the security of your web applications. It performs "black-box" scans, i.e. it does not study the source code of the application but will scans the webpages of the deployed webapp, looking for scripts and forms where it can inject data. Once it gets this list, Wapiti acts like a fuzzer, injecting payloads to see if a script is vulnerable. It is able to differentiate ponctual and permanent XSS vulnerabilities.
jnetscan is a simple java network scanner, it allows you to scan networks, find reachable hosts , opened ports and sheared resources, with additional functions (ping, trace route, netstat, send message, ...).