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After a program has been thrown into the world in binary form, it can boomerang back as source code. The Boomerang reverse engineering framework is the first general native executable decompiler available to the public.
Reflexil is an assembly editor and runs as a plug-in for Red Gate's Reflector and Telerik's JustDecompile. Reflexil is using Mono.Cecil, written by Jb Evain and is able to manipulate IL code and save the modified assemblies to disk. Reflexil also supports C#/VB.NET code injection.
MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. This package provides an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.
IDC is an interactive decompiler, where the user starts with an almost literal translation of Assembly code in C language, which he progressively decompiles by the successive application of low-level refactorings, ultimately leading to high-level C code.
LGL is a compendium of applications for making the visualization of large networks and trees tractable. LGL was specifically motivated by the need to make the visualization and exploration of large biological networks more accessible.